I use just lr-tyrquake and copy files of "Abyss of Pandemonium" to folder I've created maybe/home/pi/RetroPie/roms/ports/quake/aopfm_v2

and then I create a bash script inside nano /home/pi/RetroPie/roms/ports/quake/Abyss.sh that contains:

#!/bin/bash path="/home/pi/RetroPie/roms/ports/quake/aopfm_v2" #------------ "/opt/retropie/supplementary/runcommand/runcommand.sh" 0 _PORT_ "quake" "${path}/pak0.pak"

That's all